SimNIBS TMS Electric Field Simulation and Head Modeling Integration in InVesalius
Implementation of a direct integration between SimNIBS and InVesalius to enable subject-specific head model generation and TMS electric field (E-field) simulations within InVesalius. Currently, head modeling and E-field simulations require external workflows and manual data handling. This project will integrate the full pipeline into InVesalius, allowing users to generate MRI-based head models, position and orient TMS coils using existing neuronavigation tools, configure simulation parameters, execute simulations internally, and visualize E-field magnitude (|E|) directly on 3D anatomical models. The activity will focus on implementing a Python-based interface to SimNIBS, aligning coordinate systems, handling simulation inputs/outputs robustly, and integrating results into the InVesalius visualization environment. Deliverables: Integrated MRI-based head modeling pipeline. Python interface module connecting InVesalius to SimNIBS. UI panel for head modeling and simulation configuration. Execution of TMS E-field simulations within InVesalius. 3D visualization of E-field magnitude (|E|). Technical documentation.
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