Open Bioinformatics Foundation (OBF) GSoC projects

Every Google Summer of Code project accepted at Open Bioinformatics Foundation (OBF), grouped by program year. Open a project to see its contributor, mentors, technologies, and source code.

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GSoC 2022

5 projects

Feature Viewer - Enhanced User Experience and Performance
Chalith Tharuka
Journal tracker – finalise and deploy React front-end
Padmaja Bhol
Efficient data layout for mass spectrometry data (OpenMS)
Pranav Joshi
Genestorian data refinement
Anamika Yadav
Migration of the backend to Express, GraphQL, and MongoDB
Devesh Kumar

GSoC 2021

8 projects

Implementations of AVX-512 functions
Kunwar Maheep Singh
Developing WellcomeML further for the visualisation of academic research data
Federica Trevisan
Enabling and prototyping JavaScript visualizations in the Qt-based viewer TOPPView (OpenMS).
Dhanmoni Nath
Implementation of NEON functions (SIMDe)
Atharva Nimbalkar
Design and implementation of Code is Science front-end using ReactJS
Isaac Miti
Data streaming in scientific workflows, implementation for Toil
Mihai Popescu
gtfBase- A curated resource of multispecies genomic regions
Tanishq Gupta
Development of a user interface to visualise VEP data using neXtProt tools
Shrey Sachdeva

GSoC 2020

8 projects

Implementation of SVML in SIMDe
Himanshi Mathur
OpenMS R-Package
Shekhar Shukla
Parallel Graph Traversal for Variation Graphs
Francesco Porto
Implementing user-friendly search features
Boshen Yan
Healthcare-Researcher-Connector (HRC): A Federated Learning package for bridging the gap between Healthcare providers and researchers
Srijan Verma
SIMDe : Add implementations of ISA extensions (SSE4.2 and AVX512) and NEON implementations of SSE4.1,SSE4.2,SSE3,SSSE3 ISA extension
Hidayat Ullah Khan
Protein sequence and structural analysis CWL pipeline for comparative biology
Eliza Martin
Using DeNovo Sequencing to Predict Protein Database Suitability
T. Waschischeck

GSoC 2019

5 projects

antiSmash submission redesign
Jeevan
Add Variant Graph (VG) support to BioD
Njagi Mwaniki
BAM to ADAM converter on Sambamba’s base
Nick Rozinsky
Interactive Yeoman generator for BioJS components
Nikhil Vats
Add blockchain and hyperledger support for the ‘Journal of Open Data Publications’
Pradyumna Bang

GSoC 2018

5 projects

Adding methods to cobrapy for improved constraint-based metabolic modelling.
synchon
Frontend Website Student Project for BioJS
Sarthak Sehgal
Implement the support for Research Object specification into Nextflow framework
Edgar Garriga Nogales
Improve Posterior Error Probability Estimation For Peptide Search Engine Results
Sophia Mersmann
Backend Website Student Project
MEGH THAKKAR

GSoC 2017

7 projects

Adding Python 3 compatibility and improving mypy support for cwltool
Manvendra Singh
Implement algorithms for the generation of high-resolution isotope patterns
Nikos Patikas
antiSMASH Migration to Template System
Mariana Nave
ETE/Tree matcher
Dimitris Pliakos
GeneNetwork Genome Browser
Christian Fischer
Common Workflow Language reference implementation modernization- Making cwltool and schema-salad, Microsoft Windows compatible and providing complete Python 3 support for cwltool and schema-salad
Kapil kumar
Bionode-Watermill - A Streaming Workflow Engine for Bioinformatics
Tiago Jesus

GSoC 2016

7 projects

openSNP: Linking Phenotypes to SNPs in openSNP
Vivek Rai
Automated tool wrapper/converter for CWL
Anton Khodak
Bionode workflow engine for streamed data analysis
thejmazz
openSNP: Extending Quantified-Self Support in openSNP
gdyer
OpenSNP
mateusjabour
Improve the prediction for RiPP clusters
MNave
GeneNetwork Genome Browser
christian_f