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PROJECTS

OpenMS GSoC projects

5 accepted projects across 2 cycles, 2025 to 2026. Each one links to its contributor, mentors and code.

Projects listed

5

Across 2 cycles

In GSoC 2026

3

2 in 2025

Busiest cycle

2026

3 projects

Mentors named

4

Across all listed projects

First cycle

2025

Latest 2026

Projects per cycle

OpenMS, 2016 to 2026

  1. 3
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OpenMS projects per cycle
Projects
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  1. imzML Parser in OpenMS

    Aditya Sarna

    Mass spectrometry imaging (MSI) is a powerful analytical technique that enables spatial mapping of molecules within biological tissues. The imzML...

  2. Optimizing Casanovo for Real Time De Novo Peptide Sequencing

    Gaurav SRC

    Casanovo is a transformer-based de novo peptide sequencer that is too slow for real-time instrument use. I will profile the new non-autoregressive...

  3. Unify Development Dependencies using Vcpkg

    NPC

    Like many large scale software projects, OpenMS has numerous development dependencies. Unfortunately, there is no straightforward way to quickly and...

  1. Accelerated Read/Write and Robust OpenMS Workflows (ARROW)

    Avni BadiwaleMentored by Timo Sachsenberg, SamWein

    This is a biparted project in which we first focus on integrating Apache Arrow into OpenMS’s build system and dependency management framework, as...

  2. Optimizing Casanovo for Fast and Accurate De Novo Peptide Sequencing

    lingwen xuMentored by Wout, Bill Noble

    I'm tackling Casanovo's slow beam search decoding, which stalls big proteomics datasets. By reducing GPU-CPU transfers and removing redundant steps,...

Data: Google Summer of Code public archive. Official GSoC archive