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OpenMS

OpenMS is an open-source C++ software library for mass spectrometry data management and analysis with python wrappers. OpenMS houses an expansive modular toolset and ready-to-use scientific workflows in Galaxy, KNIME and nextflow.

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GSoC Participation History

20262025

Technologies

pythoncythonc++rpytorchStreamlit

Topics

automationdeep learningalgorithmswebdevopen sciencemass spectrometry

Past Projects

imzML Parser in OpenMS

Mass spectrometry imaging (MSI) is a powerful analytical technique that enables spatial mapping of molecules within biological tissues. The imzML...

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Optimizing Casanovo for Real Time De Novo Peptide Sequencing

Casanovo is a transformer-based de novo peptide sequencer that is too slow for real-time instrument use. I will profile the new non-autoregressive...

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Unify Development Dependencies using Vcpkg

Like many large scale software projects, OpenMS has numerous development dependencies. Unfortunately, there is no straightforward way to quickly and...

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Frequently Asked Questions

OpenMS | GSoC Org Profile & Stats - Learn about OpenMS's involvement in Google Summer of Code (GSoC), their technologies, detailed reports.

Category:

Science and medicine
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Contributor Readiness

Participation

Projects

Top Programming Languages

python dominates with primary adoption

Project Difficulty Distribution

Beginner
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Intermediate
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Advanced
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No difficulty data available

Browse all 5 OpenMS GSoC projects