National Resource for Network Biology (NRNB)
Developing open source tools for network biology
GSoC Participation History
Technologies
Topics
Past Projects
SBOL2 SBOL3 Convertor Utility
The Synthetic Biology Open Language (SBOL) serves as a vital community standard for representing biological designs, with version 3.1 offering mature...
Developing a highly efficient numerical ODE solver in Systems Biology Simulation Core Library
The field of computational biology depends significantly on mathematical modeling to simulate complex biological simulations, often involving...
SeqTrainer - creating datasets from SynBioHub to aid researchers in creating machine learning models
In the realm of synthetic biology, there is a significant source of data in the form of models, genetic sequences, regulatory networks, and...
CySBML Reloaded: Smarter, Simpler, Automated
CySBML Reloaded: Smarter, Simpler, Automated focuses on upgrading CySBML ā a Cytoscape app for visualizing computational models encoded in SBML. The...
Enhancing SBOannotator with LLM Integration & Dynamic Term Retrieval
This proposal aims to transform SBOannotator from a static, hard-coded tool into a dynamic, intelligent system for annotating SBML models with...
Project #263: Chatbot to query VCell modeling resources
This project aims to build an intelligent chatbot and web interface that allows researchers to query and explore models from the VCell BioModel...
Enhancing the Systems Biology Simulation Core Library (SBSCL) with a Solver-Agnostic Framework...
This project addresses the current incompatibility of the Systems Biology Simulation Core Library (SBSCL) with modern computing architectures,...
LLM-Powered Interactive Chat Interface for CellMinerCDB with GraphRAG Integration
This project will develop an intelligent chat interface for CellMinerCDB, a cancer genomics database, using GraphRAG (Graph Retrieval-Augmented...
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