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GSOC 2018 PROJECT

Integrating CAD and CAM tools for automating a synthetic biology workflow

Integrated Build Software Optimisation Tools (BOOST) with SBOLDesigner. SBOLDesigner is a CAD tool for creating and manipulating the sequences of...

Contributor
Prem Prakash Singh
Mentors
Chris Myers, Michael Zhang, Ernst Oberortner
Organization
National Resource for Network Biology (NRNB)Science and medicine
Program
GSoC 2018Completed · Advanced difficulty

About this project

Description from the program archive

<p>Integrated Build Software Optimisation Tools (BOOST) with SBOLDesigner. SBOLDesigner is a CAD tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model and BOOST is a repertoire of CAD/CAM tools for minimizing the cost and time for synthesizing DNA sequences with the maximal success rate of synthesis.</p> <p>Integration of them enabled automated synthetic biology design-build workflows by providing different functionalities like the DNA Sequence verification against constraints, modification of complex region according to the genetic code, fragmentation of large sequences depending on max. length of synthesis and desired assembly protocol.</p>

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Data: Google Summer of Code public archive. This project in the official archive