About this project
Description from the program archive
CySBML Reloaded: Smarter, Simpler, Automated focuses on upgrading CySBML — a Cytoscape app for visualizing computational models encoded in SBML. The project will enhance usability, improve stability, and introduce automation features, making it easier for researchers to explore, validate, and interact with complex biomedical models through an intuitive and streamlined interface based on network visualization.
The main project outcomes of CySBML Reloaded: Smarter, Simpler, Automated will be a major release of CySBML, with an updated backend supporting automation features, an up-to-date frontend addressing usability issues, updated REST APIs, improved reading of SBML, and improved visualization capabilities such as network and cofactor collapse. This will allow us to integrate CySBML in modeling workflows based on Python/R.