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GSOC 2017 PROJECT

Develop a web service which provides simulation / steady state analysis / parameter estimation with SBML models

In systems biology, it is very important to formalize the model for biological phenomenon and analyze based on this model basically constructed by...

Contributor
Takahiro Yamada
Mentors
Kaito Ii, Andreas Dräger
Organization
National Resource for Network Biology (NRNB)Science and medicine
Program
GSoC 2017Completed

About this project

Description from the program archive

<p>In systems biology, it is very important to formalize the model for biological phenomenon and analyze based on this model basically constructed by ordinary differential equation(ODE). The model is normally described by SBML and there are several software tools to create the model easily. Regarding the analysis, this is considered as simulation, steady state analysis and parameter estimation. These methodologies are mathematically formalized and the library to analyze already exists. However, establishing the environment of analysis is difficult for biologists. Therefore, this is the obstacle to analyze ODE model easily. This project implement the web application to execute these analysis solving this problem. Web application does not require complicated establishment of analysis environment for users. This project removes the barrier for users to analyze ODE model.</p>

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Data: Google Summer of Code public archive. This project in the official archive