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GSOC 2017 PROJECT

Adding support for PSIMI-TAB format to the Disease Variant Impact (DV-IMPACT) Database

The goal of the project would be to add support for PSIMI-TAB format to the admin tools of the DV-IMPACT database and allow the upload and download...

Contributor
Raghav Jajodia
Mentors
Gary Bader, Mohamed Helmy
Organization
National Resource for Network Biology (NRNB)Science and medicine
Program
GSoC 2017Completed

About this project

Description from the program archive

<p>The goal of the project would be to add support for PSIMI-TAB format to the admin tools of the DV-IMPACT database and allow the upload and download of PPI network data in the same format. Currently, the data upload can only be performed by the database admin. The objective is to create registration and user profile system that allows users to register and upload their own data independently without the need of the database admin to be involved in the upload process.</p> <p>The summarized goals would be:</p> <ol> <li>Create registration and user profile system that allows users to register and upload their own data independently.</li> <li>Add support for PSIMI-TAB format to the admin tools of the DV-IMPACT database.</li> <li>Add download PPI networks in PSIMI-TAB format to the frontend of DV-IMPACT database.</li> </ol> <p>The Project fulfills all these issues by:</p> <ol> <li>Creating a User Profile system type forum.</li> <li>Allow users to register, upload and download domain-peptide PPI data in the specified format.</li> <li>Modify the DV-IMPACT database present in the server to handle the upload to the admin tools in PSIMI-TAB format.</li> </ol> <p>Link to the evaluation task: <a href="http://dvimpact.herokuapp.com/" target="_blank">http://dvimpact.herokuapp.com/</a></p> <p>Github Repo: <a href="https://github.com/jajodiaraghav/DV-IMPACT" target="_blank">https://github.com/jajodiaraghav/DV-IMPACT</a></p>

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Data: Google Summer of Code public archive. This project in the official archive