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GSOC 2019 PROJECT

BridgeDb Major Release

BridgeDb is a platform used for identifier mapping in WikiPathways and PathVisio with support for various languages like as a Cytoscape plugin, as an...

Contributor
Manas Awasthi
Mentor
Egon Willighagen
Organization
National Resource for Network Biology (NRNB)Science and medicine
Program
GSoC 2019Completed

About this project

Description from the program archive

<p>BridgeDb is a platform used for identifier mapping in WikiPathways and PathVisio with support for various languages like as a Cytoscape plugin, as an R package, and an API implemented in OpenRiskNet and OpenPHACTS. BridgeDB provides a platform to link other databases like Ensembl, NCBI Gene, ChEBI, PubChem, etc. The main idea of this project is to add functionality and release a major version of BridgeDb. This new version would support Java version above 8. It will also have support for ‘Secondary identifier’. As a part of the project, metadata output provided by BridgeDb will also be formatted to meet the ‘The FAIR Guiding Principles for scientific data management and stewardship’.</p>

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Data: Google Summer of Code public archive. This project in the official archive