Skip to content
GSoC Organizations / Guide
Account

GSOC 2016 PROJECT

The Online Resource for Interface Based Interaction Networks (TOR-IBIN) Web Interface

TOR-IBIN will be an online resource for gathering and storing published interface-based protein-protein interactions (PPI). TOR-IBIN aims to make...

Official project Report document
Contributor
MilesGSOC
Mentor
Mohamed Helmy
Organization
National Resource for Network Biology (NRNB)Science and medicine
Program
GSoC 2016Completed

About this project

Description from the program archive

<p>TOR-IBIN will be an online resource for gathering and storing published interface-based protein-protein interactions (PPI). TOR-IBIN aims to make these networks available in a central repository with a unified format. The web interface will have a comprehensive search functions and provide options to download the integrated data in standard formats. The interface will also have a visualization module to visualize PPI data as a network, annotated with features of the predicted PPIs using the Cytoscape.js network visualization library.</p>

Tags

WebAI

From the people who did it

No proposal or progress posts shared yet

Worked on this project? Share the proposal that got you selected and the posts you wrote.

Claim this project

GSOC 2016

More National Resource for Network Biology (NRNB) projects in 2016.

All projects

  1. Principal Coordinate Analysis and t-Distributed Stochastic Neighbor Embedding in clusterMaker2

    Supun ArunodaMentored by Scooter Morris

    ProjectReport

  2. Enhance vignettes and plugin use for R package RCy3 for network manipulation using Cytoscape

    joooliaMentored by Augustin

    ProjectCode

  3. Visualizing genomic alterations in TCGA cancer pathways in cBioPortal

    Istemi BahceciMentored by Ugur Dogrusoz

    ProjectReport

  4. Improving Web Based SBGN Editor SBGNViz.js

    Metin Can SiperMentored by Ugur Dogrusoz

    ProjectReport

  5. Java support for Deviser, a code generation system for SBML libraries

    Hovakim GrabskiMentored by Frank T. Bergmann

    ProjectReport

  6. Import graphs in multiple formats and Cytoscape files into GraphSpace

    MridulSMentored by Murali

    ProjectSummary

  7. GSoC: JSBML Validation System

    Roman SchulteMentored by Andreas Dräger

    ProjectCode

  8. SBGN-ML and SBML to Escher Converter

    Devesh KhandelwalMentored by zakandrewking

    ProjectCode

  9. Interconvertible Layout program for CellDesigner

    KaitoMentored by Akira Funahashi

    ProjectReport

  10. Interconversion between the systems biology modeling formats SBML and BioPAX

    tramyMentored by Mike Hucka

    ProjectWork

  11. Multithread Centiscape (#55)

    ibestvinaMentored by giovanniscardoni@gmail.com

    ProjectCode

  12. Cytoscape command line scripting enhancements

    Ashish TiwariMentored by Scooter Morris

    ProjectCode

  13. Tutorials for Cytoscape.js

    joseph.stahlMentored by Max Franz

    ProjectCode

  14. Extending Cytoscape.js: Addition of Clustering Algorithms

    Zhaoyuan Zoe XiMentored by Mike Kucera

    ProjectSummary

Data: Google Summer of Code public archive. This project in the official archive