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GSOC 2021 PROJECT

Implementing multiple clustering algorithms and dimensionality reduction techniques on clusterMaker2

Implementing following dimensionality reduction techniques and clustering algorithms to clusterMaker2: UMAP, t-SNE, PCA, PCoA, Louvain, Walktrap,...

Contributor
Maija Utriainen
Mentors
Scooter Morris, Alex, Yihang Xin
Organization
National Resource for Network Biology (NRNB)Science and medicine
Program
GSoC 2021Completed

About this project

Description from the program archive

<p>Implementing following dimensionality reduction techniques and clustering algorithms to clusterMaker2: UMAP, t-SNE, PCA, PCoA, Louvain, Walktrap, Edge Betweenness, Surprise, DBSCAN, Spectral clustering and Self Organizing Map. This project is a continuation from last summer's clusterMaker2 project, when I implemented a feature that allows running the algorithms on a remote server. These algorithms that will be added will also use the remote feature.</p>

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Data: Google Summer of Code public archive. This project in the official archive