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GSOC 2021 PROJECT

Enhancing ABioTrans Plus using Gene Expression Omnibus database and adding analysis report

This project aims to add new features to ABioTrans Plus(GeneCloudOmics) that includes the direct import of gene expression data from Gene Expression...

Contributor
Javed Ali
Mentors
Mohamed Helmy, buithuytien1313
Organization
National Resource for Network Biology (NRNB)Science and medicine
Program
GSoC 2021Completed

About this project

Description from the program archive

<p>This project aims to add new features to ABioTrans Plus(GeneCloudOmics) that includes the direct import of gene expression data from Gene Expression Omnibus (GEO) databases, Machine learning-based analysis, creating a detailed report with the performed analysis with figures and data, and add more gene expression analysis methods e.g. Gene Set Enrichment Analysis (GSEA) and sample comparison analysis and plots. Also, provide Docker support and CI/CD pipeline.</p>

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Data: Google Summer of Code public archive. This project in the official archive