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GSOC 2024 PROJECT

Improvement Of openPIP (Data upload & Visualization)

Contributor
Mohamed Soudy
Mentors
Mohamed Helmy, Diogo Pellegrina
Organization
National Resource for Network Biology (NRNB)Science and medicine
Program
GSoC 2024Completed

About this project

Description from the program archive

OpenPIP platform is typically necessary alongside a research paper detailing experimental data, alongside depositing the data into a standard repository. Setting up and tailoring the database and web portal doesn't demand any coding expertise. OpenPIP has been utilized in constructing the databases and web portals for two significant protein interactome maps: the Human and Yeast Reference Protein Interactome maps (HuRI and YeRI). o The current data import/upload module uses the standard Proteomics Standards Initiative Molecular Interactions (PSI-MI) format and connects to several public databases to collect further information for all proteins in the dataset. Possible improvements as data upload and visualization are the main goals of this milestone.

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Data: Google Summer of Code public archive. This project in the official archive