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GSOC 2024 PROJECT

Integration of complexity score functions into the iGEM DNA kit distribution workflow

Contributor
Johan Guillen
Mentors
jakebeal, Gonza10V
Organization
National Resource for Network Biology (NRNB)Science and medicine
Program
GSoC 2024Completed · Advanced difficulty

About this project

Description from the program archive

The goal is developing an updated workflow that uses the existing iGEM distribution structure to integrate a synthesizability assessment of genetic designs and build plans for DNA assembly, with the purpose of facilitating DNA synthesis orders. For this, I am going to integrate the SBOL-utilities script of calculate_complexity_scores.py (https://github.com/SynBioDex/SBOL-utilities/blob/develop/sbol_utilities/calculate_complexity_scores.py) into the iGEM-Actions workflow(https://github.com/iGEM-Engineering/iGEM-actions), storing metadata in the Synthetic Biology Open Language(SBOL)

Tags

UI

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Data: Google Summer of Code public archive. This project in the official archive