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GSOC 2022 PROJECT

High-throughput simulation for computational cell biology with Cloud-COPASI

Contributor
Fizza Rubab
Mentors
Hasan Baig, Pedro Mendes
Organization
National Resource for Network Biology (NRNB)Science and medicine
Program
GSoC 2022Completed · Beginner difficulty

About this project

Description from the program archive

Customized SSH Authentication Free Implementation of the Cloud-COPASI for UConn users: The project proposal aims to create a customized version of Cloud-COPASI that already has a predefined HPC pool connection which will be used by all registered users of this version of Cloud-COPASI. It will also implement a quota system to prevent abuse of computing resources. This will be accomplished by using a predefined SSH connection to the facility. Instead of user holding the private key and moving the public key to the remote submit node, the server holds a database of all remote nodes and for each node it creates a separate public and private key pair. The public key will be copied to the remote node. The private key would be saved on the server. Whenever an authenticated user tries to connect to a particular submit node in the HPC facility, the private key for that node will be fetched by the server and will be used to authenticate the user against that remote node and there will be no need for the user to configure and enter any private key at all. Thus there will be just one private key for all users of a particular submit node. Server will also keep a tally of all the users that are currently using the server's private key at the moment. This will help implement a quota system to ensure that the resources are not maxed out. Over the span of 12 weeks, a customized version of cloud COPASI will be produced that will provide an easy to use interface for UConn users to submit their jobs and get results in quick time.

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Data: Google Summer of Code public archive. This project in the official archive