About this project
Description from the program archive
<p>Pathways are created by selecting certain genes and studies then displayed in the PathwayMapper tab in the cBioPortal. However, not every page in cBioPortal has a direct link to PathwayMapper hence making inferences from specific pages and reflecting the outcome to PathwayMapper is not straightforward. In order to overcome the struggle to interact between the pages and pathways, a PathwayMapper tab will be incorporated into Study View, Patient View, and Comparison pages. To test the implementations, I will deploy cBioPortal to Heroku so that I can test the code and ensure that it works in a remote server. PathwayMapper is used to construct pathways however pathways can become very complex and hard to understand as the data mounts. Some features are expected to be implemented in PathwayMapper to decrease the complexity of pathways and make it easy for users to draw conclusions. Features expected to be implemented are Expand-collapse operations, Hide-show operations, Filtering, Highlighting. For PathwayMapper editor features I will use functionalities that are already implemented in the Cytoscape.js. Bugs in Collaborative Mode will be fixed.</p>