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GSOC 2020 PROJECT

Improving compmodelmatch.org

This project intends to make several improvements to compmodelmatch platform which will improve its performance and also add features such as ORCID...

Contributor
Sahil Jha
Mentors
Danny Fryer, Michael Blinov
Organization
National Resource for Network Biology (NRNB)Science and medicine
Program
GSoC 2020Completed

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Description from the program archive

<p>This project intends to make several improvements to compmodelmatch platform which will improve its performance and also add features such as ORCID and OAuth2 API Integration which will result to improve the usability of the platform.</p>

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  1. Implementation of SBML-JSON converter and SBML-JSON scheme

    HemantMentored by Matthias König, Lucian Smith, Andreas Dräger +1

  2. Development of a system that generates spatial SBML models using deep learning

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  3. Developing a tool for implementing clustering algorithms to Cytoscape app ClusterMaker2

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  5. Implement a comment/discussion system in GraphSpace

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  6. Enhancing PathwayMapper in cBioPortal and PathwayMapper editor

    Merve KılıçarslanMentored by Ugur Dogrusoz, ALEXANDER PICO, Onur Sumer +1

  7. Redevelop Model Bricks code base architecture

    Saksham RaghuvanshiMentored by Ann Cowan, Frank Morgan, Michael Blinov +1

  8. Simulation of systems biology models in Java: support for new features

    Hemil PanchiwalaMentored by Shalin Shah, Matthias König, Mykola Zakharchuk +1

  9. Integrating RRPlugins with libRoadRunner

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  10. Integration of sequence visualization into SynBioHub

    Linhao MengMentored by Geoff Baldwin, Christopher Myers

  11. Spreadsheet Plug-in for SynBioHub

    Isabel MarleenMentored by Christopher Myers, JVM, jakebeal

Data: Google Summer of Code public archive. This project in the official archive