BioJS
BioJS is an open source project that visualizes biological data using JavaScript
- 2026
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DIRECTORY
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BioJS is an open source project that visualizes biological data using JavaScript
Analytical solutions for Next-Generation Sequencing data
The cBioPortal for Cancer Genomics is a resource designed to provide broad community access to cancer genomic data. It provides a unique user-friendly and "biology-centric computational user interface", with the goal of making genomic data more easily accessible to translational scientists, biologists, and clinicians. The interface was explicitly built and continues to evolve with careful usability studies involving multiple biological and clinical users, and an active and engaged user base.
Develop translational data science.
Tool development in bioinformatics, computational biology, data visualization
Authoritative databases of genome sequences and their function
The Global Alliance for Genomics and Health (GA4GH) was formed to help accelerate the potential of genomic medicine to advance human health. It brings together over 400 leading genome institutes and centers with IT industry leaders to create global standards and tools for the secure, privacy respecting and interoperable sharing of Genomic data.
The National Resource for Network Biology (NRNB, https://nrnb.org) organizes the development of free, open-source software technologies to enable network-based visualization, analysis, and biomedical discovery. Biomedical research is increasingly dependent on knowledge expressed in terms of networks, including gene, protein and drug interactions, cell-cell and viral-host communication, and vast social networks. Our technologies enable researchers to assemble and analyze these networks and to use them to better understand biological systems and, in particular, how they fail in disease. The NRNB mentoring organization includes projects such as Cytoscape (https://cytoscape.org/), WikiPathways (https://wikipathways.org/), SBML (https://sbml.org/), SBGN (https://sbgn.github.io/) and others. This is a great opportunity to work at the intersection of biology and computing! For example, Cytoscape is downloaded over 24,000 times per month by researchers. We take mentoring seriously and are proud of our 96% success rate (https://nrnb.org/alumni.html#gsoc-tab) with former students and projects. But don’t take our word for it, read testimonials from prior NRNB students (https://nrnb.org/testimonials.html#student-tab) and mentors (https://nrnb.org/testimonials.html#mentor-tab). Find out more about the software projects being developed in coordination with NRNB at our website (https://nrnb.org). Also refer to our GSoC page (https://nrnb.org/gsoc.html) for additional resources and application tips.
Open Source & Open Science in biological research
The Open Genome Informatics group represents an umbrella organization consisting of several open source and open access genomics and bioinformatics projects worldwide. Our goals are to develop and maintain a collection of sustainable software tools for managing, analyzing, visualizing, storing, and disseminating genomic data.
A cross-platform, visual-programming tool for data mining and visualization.
Unified and efficient Machine Learning
The UCSC Open Source Program Office (OSPO) and the UC OSPO Network supports open source work throughout the University of California system. Beginning in 2022, the UCSC OSPO took over the programmatic responsibilities of the UCSC Center for Research in Open Source Software (CROSS), including mentorship activities such as GSoC. The UCSC OSPO creates partnerships with stakeholders within and outside the UC system in order to help students learn from open source communities, support scientists in using open source to accelerate research efforts, and connect students and scientists with sponsors from industry, government, and foundations. The OSPO helps bridge the gap between academic research and successful open source projects by promoting innovative projects maintained by UC-affiliated scientists and researchers. We support the transfer of cutting-edge technology resulting from UC-originating research to industry via successful open source projects. Due to the multi-campus nature of our current efforts, the projects we support and promote cover a wide range of topics and technologies - including:
Helping biologists see the bigger picture in diverse cancer genomics data
Genome analysis for all species
Contributor counts are accepted projects per cycle.
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